 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_22486A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TALE |
| Protein Properties |
Length: 344aa MW: 37692.4 Da PI: 6.524 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_22486A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 30 | 8.6e-10 | 269 | 304 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55
+k +yps++e+ LA+++gL+++q+ +WF N+R ++
Oropetium_20150105_22486A 269 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 304
4679*****************************885 PP
|
| 2 | ELK | 37.9 | 3.9e-13 | 224 | 245 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLl+KYsgyL+sL+qEFs
Oropetium_20150105_22486A 224 ELKYQLLKKYSGYLSSLRQEFS 245
9********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001708 | Biological Process | cell fate specification |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010051 | Biological Process | xylem and phloem pattern formation |
| GO:0010089 | Biological Process | xylem development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MDQSFGNLGA GGSSSGGGSN SKAASSTSFL QLPLSSAAAS PAGGVAYYGT PLALLHQAAA 60
GPSSSSQYGR HSVEISPAEA EAIKAKIVAH PQYSALLTAY LDCQKVGAPP DVLEKLTAMA 120
AKLDARPPNR HEQRDPELDQ FMEAYCNMLV KYREELTRPI DEAMEFLKRV EAQLDSISGA 180
SGGPARLSLA DGKSEGVGSS EDDMDASGRE NEPPEIDPRA EDKELKYQLL KKYSGYLSSL 240
RQEFSKKKKK GKLPKEARQK LLHWWELHYK WPYPSETEKI ALAESTGLDQ KQINNWFINQ 300
RKRHWKPSED MPFVMMEGFH PQNAAALYMD GPFMADGMYR LGS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. |
| UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP101469 | 0.0 | FP101469.1 Phyllostachys edulis cDNA clone: bphyst005d10, full insert sequence. |
| Publications
? help Back to Top |
- Sato Y, et al.
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J., 1999. 18(4): p. 992-1002
[PMID:10022841] - Ito Y,Eiguchi M,Kurata N
KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
Genesis, 2001. 30(4): p. 231-8
[PMID:11536429] - Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
Plant Cell, 2001. 13(9): p. 2085-98
[PMID:11549765] - Postma-Haarsma AD, et al.
Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
Plant Mol. Biol., 2002. 48(4): p. 423-41
[PMID:11908517] - Kuijt SJ, et al.
Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
Plant Mol. Biol., 2004. 55(6): p. 781-96
[PMID:15604716] - Yin H, et al.
SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
Planta, 2013. 237(1): p. 15-27
[PMID:22956125]
|
