PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_22428A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 364aa    MW: 39262.1 Da    PI: 7.2859
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_22428AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.75.2e-23230285156
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                k r++W+peLH+          G+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Oropetium_20150105_22428A 230 KSRRCWSPELHRXXXXXXXXXXGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285
                                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-11228288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-21228288IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17230285IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGLDVAEIGM GSDLSLDLRY FASRAVRQTK DSPAPDMDAY IRRLEEERGK IEVFRRELPL  60
CARLLADVID VMKEETEXXX XXXXXXXXXX DGAAGDKSKW MSTAQLWTGG RDAAEAEKKQ  120
VLAPAEAKSC GGAFVPFKAA AVGARKDDDK AADARTPDLS LLSPPPPPAI KSAAPAAAAV  180
AVADESHQRQ VVGFAXXXXX XXXXXLAPSG PAALSLQPQP QQTTQQQARK SRRCWSPELH  240
RXXXXXXXXX XGPQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRTP AAAGPGVVSQ  300
PIVVMGGLWI PHQEQSSSHQ SGSPHAHGPI HFSATSGIAV SSAATACSEE EDGRSSEMSY  360
GWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_22428A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519323e-65JF951932.1 Triticum aestivum clone TaMYB49 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150001.11e-128myb-like DNA-binding domain, SHAQKYF class family protein
TrEMBLA0A3L6FWW51e-126A0A3L6FWW5_MAIZE; Myb family transcription factor EFM
TrEMBLB6TK281e-126B6TK28_MAIZE; Myb-like DNA-binding domain, SHAQKYF class family protein
STRINGGRMZM2G173882_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-29G2-like family protein