PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_22201A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 249aa MW: 27197.7 Da PI: 7.1077

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_22201A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	21.9	3.9e-07	68	88	2	23
G2-like 2 prlrWtpeLHerFveaveqLGG 23 prlrWtpeLH +F++a+++ G Oropetium_20150105_22201A 68 PRLRWTPELHLCFLRALQEG-G 88 9****************984.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-6	64	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEESNRGFAS SKDQLAPGNG KEAAAAVDDA PHGSSSNSST VDIDGGDSSR SRKTSSSSVR 60 PYVRSKNPRL RWTPELHLCF LRALQEGGQV YNLGHLSLHH AQTGSGTILS ARFGAWPYWN 120 NSHESYRLHC GHGIESKHYY YSTTADAFLI ARAPYVARHT CTPTTTIPQE YSSSQNDQIM 180 NGHGRQTLKK DDDDDDPLDL KLALNIGPQR WDKRKRSGFS CDKQGDDNGG DQVESNATGP 240 LSLSLFPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_22201A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321607.1	9e-50	uncharacterized protein LOC8064764
TrEMBL	A0A1E5VA20	2e-55	A0A1E5VA20_9POAL; Uncharacterized protein
STRING	Sb05g000480.1	2e-54	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-09	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_22201A