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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_22098A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 36733.6 Da PI: 7.8966 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_22098A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 100 | 3.3e-31 | 5 | 80 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e+vg+kk Lvfy+g+ pkg+ktdW+mheyrl
Oropetium_20150105_22098A 5 GENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSENVGVKKALVFYRGKPPKGVKTDWIMHEYRL 80
578*************************************9989999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
KALFGENEWY FFSPRDRKYP NGARPNRAAG SGYWKATGTD KAILSTPTSE NVGVKKALVF 60
YRGKPPKGVK TDWIMHEYRL TDASNTVNKK NAAKRRGSSS SSMRLDDWVL CRIYKKSNNF 120
QFSDPQEEQD GSTVEEAEPS LNNDNMNGSV ASPKSEETIY HATTDGLHQL FQNPQLSMTK 180
SCSLTDLLNT IDYTALFFDA PPETEPQHNR LIYTTASHQP PNNYNMNNNS MPQVDGALCS 240
DYGANSYNSL NRKRIMTASC FDDGGSSFTK KLPQLPSDSR SGTFFGGSSN YCNQQLAEAA 300
TATTSFQYSG LLSHPFLNQQ LLLNNHLGMQ *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-48 | 1 | 121 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-48 | 1 | 121 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-48 | 1 | 121 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-48 | 1 | 121 | 65 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-48 | 1 | 121 | 68 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 2e-48 | 1 | 121 | 65 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-48 | 1 | 121 | 65 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC123519 | 5e-88 | AC123519.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence. |
| GenBank | AK069257 | 5e-88 | AK069257.1 Oryza sativa Japonica Group cDNA clone:J023011O06, full insert sequence. |
| GenBank | AP014967 | 5e-88 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012619 | 5e-88 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
| GenBank | JN673545 | 5e-88 | JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds. |
