 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_21681A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 319aa MW: 35712.7 Da PI: 5.1147 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_21681A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.3 | 1.2e-52 | 9 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81
+ppGfrFhPtd+elv +yL+kkv+++k++l +vi++vd+y++ePw+L+ k+ e+++wyfFs +d+ky+tg+r+nrat +g
Oropetium_20150105_21681A 9 VPPGFRFHPTDDELVGYYLRKKVASQKIDL-DVIHDVDLYRIEPWHLQDhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTG 91
69****************************.9***************942443332556************************* PP
NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
+Wkatg+dk+v +k ++ l+g++ktLvfy+grap+g+kt W+mheyrle
Oropetium_20150105_21681A 92 FWKATGRDKAVRDKhGRGLIGMRKTLVFYTGRAPNGRKTGWIMHEYRLE 140
*************966678****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MVTAMESCVP PGFRFHPTDD ELVGYYLRKK VASQKIDLDV IHDVDLYRIE PWHLQDHCKI 60
GYEEQSDWYF FSYKDRKYPT GTRTNRATLT GFWKATGRDK AVRDKHGRGL IGMRKTLVFY 120
TGRAPNGRKT GWIMHEYRLE TDENAIPQED GWVVCRAFKK RSVHPPRSVV GAWDVSYSCN 180
DPNITGAAAH FNQEPTQLDG AAASLLQYSS CRSELPQLES PPPSCQESHR DTADLDANTQ 240
DAAVSTDWRA LDRFIASQLS PDPDLPTEFS KPAGTQAGDN GDAPDTVELL FLDGEREDAD 300
LLGSVPSIST FLHDKEAI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 3e-47 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KT075086 | 0.0 | KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds. |
