PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21620A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 696aa    MW: 74556.6 Da    PI: 8.6915
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21620AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.61.1e-3050134187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+q
  Oropetium_20150105_21620A  50 RWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSRKLAEQGYSRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQ 131
                                8********************************************************************97..56668****** PP

                   trihelix  85 lea 87 
                                lea
  Oropetium_20150105_21620A 132 LEA 134
                                *85 PP
2trihelix82.46e-26419504187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r++m+ r++++  k+plWee+s+ mr+ g++r++k+Ckekw           e++kkr +e+s+tcpyf+q
  Oropetium_20150105_21620A 419 RWPKAEVHALIQLRSKMDMRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWXXXXXXXXXXXESNKKR-PEDSKTCPYFHQ 501
                                8*********************************************************************8.99********** PP

                   trihelix  85 lea 87 
                                l+a
  Oropetium_20150105_21620A 502 LDA 504
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001147109IPR001005SANT/Myb domain
CDDcd122031.03E-2649114No hitNo description
PfamPF138375.9E-2149135No hitNo description
PROSITE profilePS500906.84149107IPR017877Myb-like domain
PROSITE profilePS500907.329412476IPR017877Myb-like domain
SMARTSM007170.034416478IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-4417473IPR009057Homeodomain-like
PfamPF138373.6E-16418505No hitNo description
CDDcd122031.16E-22418472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAEAPSPISS RPPAQQFDEL AAAAGGFDAE GLAAAAAGEE GASGGSAGNR WPRQETLALL  60
KIRQDMDAAF RDATLKGPLW EQVSRKLAEQ GYSRSAKKCK EKFENVHKYY KRTKESRAGR  120
NDGKTYRFFT QLEALQATGS HQAPAPAPSP VTSFAPPSTA VGVSGPLPVR APAEPPPALS  180
GMPTKMGNMS FSTSNTEDYS DEDDSDGEGT QELGADQNSG KRKRVSESGG AATGGSGSGK  240
MMRFFEGLMK QVMERQEAMQ QRFLEAIEKR EQDRMIREEA WRRQEMARLA REQEILAQER  300
TMAASRDAAV LSFIQKITGQ TIPMPSIAAP AINVMPPPPS ASPAPPPSSQ PPPPPQPPQP  360
SPQPQHKSPT PSTPQQAPPP PHQQKQSSDI VMTPAGETTP HAADTPGYDG GSGGATSSRW  420
PKAEVHALIQ LRSKMDMRYQ EAGPKGPLWE EISAGMRRLG YNRNAKRCKE KWXXXXXXXX  480
XXXESNKKRP EDSKTCPYFH QLDALYRNKA LIGSSSGGAG AAHASSTTTQ EAITVTAAAP  540
ISQTPPPQPS QSSQHAAKNG SHAGATGNGN GASSEHGASS GGMQMQATNK PEDMMKEMMM  600
EQRQQAVPSS YNRTDGGADS DNXXXXXXXX XXXXXXXXXX ADKMQYEIQF QQQHHHQQQQ  660
HQRPNAGGGG NPAGTAAPAS TAATTTTGSF LGMVQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21620A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544261e-132AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615071e-132AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727131e-132AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794483.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025794484.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391175e-67TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2S3IKR80.0A0A2S3IKR8_9POAL; Uncharacterized protein
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-47Trihelix family protein