PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21450A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 266aa MW: 27343.4 Da PI: 5.0062

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21450A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.2e-06	230	253	8	34
HHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 8 rErrRRdriNsafeeLrellPkaskap 34 Er RR+++++ +++L +llP + p Oropetium_20150105_21450A 230 TERERRKKMKNMYSTLHSLLPRL---P 253 6********************97...4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.708	222	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-5	226	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-4	226	255	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-4	227	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEINSVGTMS ASPVMKACQD VQGTNDATTA LDEGMPALGL SGSGSNSRSS FDSIKQDDED 60 ISNDSSRPMS PLVAHAGDDI IIGESKPASP LVHTGVDTNS GFKIASPLVV HAGKSNTGSN 120 MASPTMVVHA GVSKPASPAE VVASATESNK EDGEEKLAGE EINGEEAAGY GGDGVTSKSI 180 KNLSVSDVKD VDKDVPKPMN ICYGASGSSG AKGKGKGTVV GPDHAPHIWT ERERRKKMKN 240 MYSTLHSLLP RLPDKVISDP DSPAV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21450A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-12	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21450A