PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21348A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Trihelix

Protein Properties

Length: 92aa MW: 9574.62 Da PI: 5.7059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21348A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.1	2.3e-13	43	78	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+ Oropetium_20150105_21348A 43 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSS 78 8**********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MAVGQAPVAP SPMSSRPPPE DHEGGLSAAA ADEGDRSGSA GNRWPRQETL ALLKIRSEMD 60 AAFREAALKG PLWEEVSSIS GGHDKARPRA Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21348A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC121490	4e-36	AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBank	AC134237	4e-36	AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBank	AC210446	4e-36	AC210446.1 Oryza glaberrima clone OG_BBa0010J07, complete sequence.
GenBank	AC216760	4e-36	AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence.
GenBank	AC232902	4e-36	AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence.
GenBank	AK241800	4e-36	AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
GenBank	AP014959	4e-36	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	4e-36	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	FP100630	4e-36	FP100630.1 Phyllostachys edulis cDNA clone: bphylf034i06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791925.1	1e-23	trihelix transcription factor GTL1-like
Swissprot	Q9C882	8e-15	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	A0A0A9D512	2e-25	A0A0A9D512_ARUDO; Uncharacterized protein
STRING	Si034382m	2e-22	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-18	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21348A

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]