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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_21347A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
Trihelix |
Protein Properties |
Length: 428aa MW: 47267.4 Da PI: 9.9569 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_21347A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 38.5 | 3e-12 | 2 | 45 | 42 | 87 |
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
g++rs+k+C+ek+en+ k+yk++k+g+ +r ++ + +++f++lea
Oropetium_20150105_21347A 2 GYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 45
9***************************97..66667******985 PP
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2 | trihelix | 109.2 | 2.6e-34 | 324 | 409 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
rW+k ev+aLi++r+e+e r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++q
Oropetium_20150105_21347A 324 RWPKAEVHALIQLRTELEARYQDTGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQ 406
8*********************************************************************8.99********** PP
trihelix 85 lea 87
lea
Oropetium_20150105_21347A 407 LEA 409
*85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MGYKRSAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGGG GASSSPAAVS 60 LAPTPVAMAP PAAAFSLPAK HHHAHEPPPP VVTTMPPSVV TTMPPPTGTT CTIPSVDVSF 120 SSSSDDEEDT DDTAGDGGKR KRRDGNGGSN KMMRFFEGLM RQVMERQEEM QQRFIEAMER 180 REQDRMIREE AWRRQEVARL AREQDALAQE RAVAASRDAA VVSFIQRITG QTIPMPPPPP 240 AFKPTPFSSP PPPPPAQHHH YQPPSPVQLS PMKPHQTVPP TTTQSQPQPP PAESKVAVAI 300 VCAPGAQSQD TTTMGSGGAP SPSRWPKAEV HALIQLRTEL EARYQDTGPK GPLWEDISAG 360 MRRLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYYHQLEAL YRTKALAASS 420 RPEQPAVT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC121490 | 1e-105 | AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence. |
GenBank | AC134237 | 1e-105 | AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence. |
GenBank | AK241800 | 1e-105 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. |
GenBank | AP014959 | 1e-105 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |