PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21347A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 428aa    MW: 47267.4 Da    PI: 9.9569
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21347AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.53e-122454287
                   trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                               g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Oropetium_20150105_21347A  2 GYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 45
                               9***************************97..66667******985 PP
2trihelix109.22.6e-34324409187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++q
  Oropetium_20150105_21347A 324 RWPKAEVHALIQLRTELEARYQDTGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQ 406
                                8*********************************************************************8.99********** PP

                   trihelix  85 lea 87 
                                lea
  Oropetium_20150105_21347A 407 LEA 409
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-8246No hitNo description
SMARTSM007170.0032321383IPR001005SANT/Myb domain
PROSITE profilePS500907.201323381IPR017877Myb-like domain
CDDcd122038.27E-31323388No hitNo description
PfamPF138377.7E-24324410No hitNo description
Gene3DG3DSA:1.10.10.604.5E-4324380IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGYKRSAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGGG GASSSPAAVS  60
LAPTPVAMAP PAAAFSLPAK HHHAHEPPPP VVTTMPPSVV TTMPPPTGTT CTIPSVDVSF  120
SSSSDDEEDT DDTAGDGGKR KRRDGNGGSN KMMRFFEGLM RQVMERQEEM QQRFIEAMER  180
REQDRMIREE AWRRQEVARL AREQDALAQE RAVAASRDAA VVSFIQRITG QTIPMPPPPP  240
AFKPTPFSSP PPPPPAQHHH YQPPSPVQLS PMKPHQTVPP TTTQSQPQPP PAESKVAVAI  300
VCAPGAQSQD TTTMGSGGAP SPSRWPKAEV HALIQLRTEL EARYQDTGPK GPLWEDISAG  360
MRRLGYNRSA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYYHQLEAL YRTKALAASS  420
RPEQPAVT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21347A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1214901e-105AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence.
GenBankAC1342371e-105AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence.
GenBankAK2418001e-105AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
GenBankAP0149591e-105AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465995.20.0trihelix transcription factor GTL1
RefseqXP_025791925.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2T7CIN40.0A0A2T7CIN4_9POAL; Uncharacterized protein
STRINGPavir.Ia04768.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-51Trihelix family protein