PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21343A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 1865aa    MW: 204140 Da    PI: 6.0327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21343AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0618451864626
                                 -SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH    6 CrffartGtCkyGdrCkFaHg 26  
                                 C+ f ++G+C+ G++C++ H+
  Oropetium_20150105_21343A 1845 CK-FNEGGYCRKGASCSYLHP 1864
                                 88.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-795156IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.4E-9101156IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155689.50E-20111156No hitNo description
SMARTSM002492.1E-7111157IPR001965Zinc finger, PHD-type
PROSITE patternPS013590112172IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475923.71E-21337418IPR003121SWIB/MDM2 domain
SMARTSM001511.3E-4337422IPR019835SWIB domain
Gene3DG3DSA:1.10.245.101.2E-25340422IPR003121SWIB/MDM2 domain
PfamPF022011.3E-16344417IPR003121SWIB/MDM2 domain
SuperFamilySSF1590421.57E-32477606IPR004343Plus-3 domain
SMARTSM007191.6E-45477586IPR004343Plus-3 domain
PROSITE profilePS5136027.819477609IPR004343Plus-3 domain
PfamPF031266.6E-24482585IPR004343Plus-3 domain
SuperFamilySSF552772.09E-15771832IPR003169GYF domain
PROSITE profilePS5082914.42777829IPR003169GYF domain
SMARTSM004441.1E-13778831IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.7E-15779833IPR003169GYF domain
PfamPF022131.3E-9780820IPR003169GYF domain
PROSITE profilePS5010311.6118391864IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1865 aa     Download sequence    Send to blast
MEAAASGAAD LLSPPEADWP PDLRLPARPA PPPPPAQASH MDDSQFLGSI MGDSARQGPA  60
EPPAQHLAAP VVGPKKRGRP PKRRDGSAAV VAAAAPAKPA AKRGQNEEEV VCFICFDGGN  120
LVLCDRRGCP KVYHPACIKR DESFFNSRTK WNCGWHICSS CEKAVHYMCY TCTYSLCKGC  180
IKQGKFFSVR GAKGFCDTCY GTILLIESKD EASIKVDFDD INSWEYLFKL YWLDLKGKLS  240
LTLEELTSAK SRWTVPNTST RKEKEESSDD LYNIDNDDDV GSDCSSRKRR RNSSKKKGQK  300
RQKVNSSCSV PAIKVEPAIT DAGSRATKVP TEGVSSQVDT KWASPELLEF VGHMRGGDQS  360
FISQFDVQTD LLEYIKKNNL RDPKRKSQII CDARLHRLFR KARVAHFEML QLLEMHFLVN  420
ETLKVNGNSQ AAIDLNTAQI DTNGHSDMSV KLTPDKRRRI HRKMETEPQV NPEAYAAIDM  480
HNVNLIYMRR SLMEDLIDDA AFSEKIRDAF VRIKISGVGQ KQDMYRLVKV VGTHKVPEKY  540
SIGKKTTNYA LEILNLDKKE IITMDTVSNQ DFTEEECNRL RQSMKCGLIS RLKVGGVQEK  600
AKVLQSVRVK DCLENEKQRL EHLRDRASET GRKKELRECV EKLQLLNNSE ERTRRINEVL  660
EVHVDAHMDP SYESAEEMGD KKSVGANVNM TRTHTSVSRR KSKYPKSTLN HTQKISDASY  720
YPKTLPTEST TRGLRTVKKF ENFHHTNGTD IPRSSITCEA GSVSSSVLTM SSETEPEKVW  780
HYKDPSGTVQ GPFTLLQLSK WTSYFPRDLR VWLTFESEER SLLLTEVLSK QQTVFTQTAS  840
VTKSTKATSA GIDHNKNSLS MDQMNALSPT GYSMLNSSVV TVQSNKNSVL ERESVNSPED  900
CLSLSTSSIP PKYVHTLNSQ GRCQVKNSVF VQSPGSPCGQ TDLHHDGARG GCSDHHGSFA  960
LKSSIMAQMS CNGKSPLFAW SPSESRTASS QHDGSCLSST TNLNFHDEHH SSVATAKPKC  1020
CAPATPIEDR GSSSPSGMLS HSERVPICSP KSAPSASVSD MCKDEIMNQQ RTLDADTSNA  1080
SVNQSPESKI FPVYSPDNQD VDHKFPSPTP RSENNEPVVD NSGLKPASPE NLANIHSPLS  1140
GSCKMEKIVN QHNILEADAS YSSANHYPQS EVLHDKDIEP KSMRSDNKEP AIDNSLLTVA  1200
TTENLRTASA SDTDTCKMEA TMNQQTTLEE GVSNASINQS PHSNVEHAYP MLAPSSGNKE  1260
PTENPSMASA SDAGTCKMEA TTKQQTTLEE DVSNASINRS PHSKNFLVSF IDNQDIECAY  1320
PSPTPRSGDK EPSVDNSGLK SGTHENLFTA ANASDACKME EILDKKVTIE TNASSGSTTP  1380
PSKVSPVSSP DNRDIEHESP GPAPKSENRE PFVDNSVLLS SVPENETSTS ASASDGCKME  1440
MPDKKSTLET DTSNGSVAPC PRSEHFLVTS DNQDIQHEYP SPTPRPENIP VVDTGMLILE  1500
APDNLTTKTP CDSADAFALP KLGPSNGKLD AVESDFKSVE EIIQNELYCE STVVTKENIV  1560
IDPSCGAESI DVSDVLESLM EQRSGTSYMH GTAALEDLLA ASTEEEPQCS SPIALSPWGE  1620
PSYYQGDVVD SALWGIEDDP ANDMWSLLST TPTLQPSSEG LGTKASETFD INEVAVSDGI  1680
SEFFQRGPML GTENVKNAIS GAATDWQLPE QVKSKPNDIS ASSVDGNRGI AGWQPSASEN  1740
LSAGTASGTS HNLYLPGCEK ASRKQESTDF SVSWSGEAIG NTNKSWNPPS VNANRGNQKN  1800
HRRGRYSEIS ESWLLSSTNS RSRSDRFGNG GSSRPTLNGQ SRGVCKFNEG GYCRKGASCS  1860
YLHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A7e-111091781581Histone-lysine N-methyltransferase NSD3
4gnd_C7e-111091781581Histone-lysine N-methyltransferase NSD3
4gne_A7e-111091781581Histone-lysine N-methyltransferase NSD3
4gnf_A7e-111091781581Histone-lysine N-methyltransferase NSD3
4gng_A7e-111091781581Histone-lysine N-methyltransferase NSD3
4gng_D7e-111091781581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883RPPKRR
2286290RKRRR
3287300KRRRNSSKKKGQKR
4455459KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21343A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796776.10.0uncharacterized protein LOC112876812
TrEMBLA0A1E5UT960.0A0A1E5UT96_9POAL; Zinc finger CCCH domain-containing protein 44
STRINGPavir.Ib00107.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-176nucleic acid binding;zinc ion binding;DNA binding