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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_21234A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
C2H2 |
| Protein Properties |
Length: 333aa MW: 34735.8 Da PI: 7.754 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_21234A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.7 | 9.8e-06 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C+ C+++F+++ L H+r+H
Oropetium_20150105_21234A 5 TCKLCSRRFNSPRALAGHMRSH 26
6********************9 PP
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| 2 | zf-C2H2 | 12.8 | 0.00036 | 255 | 277 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C ++F++ L H r+H
Oropetium_20150105_21234A 255 HECPYCYRVFPSGQALGGHKRSH 277
79******************999 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 0.0053 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.681 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.04E-6 | 5 | 26 | No hit | No description |
| Pfam | PF13912 | 5.0E-5 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.04E-6 | 183 | 207 | No hit | No description |
| SMART | SM00355 | 55 | 188 | 208 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.2E-9 | 188 | 212 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.16 | 255 | 277 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 8.995 | 255 | 278 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 8.4E-13 | 255 | 277 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 257 | 277 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MAKNTCKLCS RRFNSPRALA GHMRSHSLAA AAAAAAAAAA AAAAAAAAKQ QISSGSSAST 60
SFTTADEDVG FKKLAAIHSP RENRKRSLRP SDGSFSDRES EVESTPPHAK RASPAATWGE 120
AEPVSSLSDA ATAEEDVALS LMKLSRDSWP SGTRFEVDYS DDGYAPPPPP NPPPRRAPAP 180
VAEKRTQFQC TACKKVFRSY QALGGHRASN VRGGRGGCCA PPWAPPPPPP QPPLPPSPLP 240
EQHGYEDMDA KQLQHECPYC YRVFPSGQAL GGHKRSHACG AAAAAAAQVD SAAVPPSPIK 300
NPAGMIDLNV EPPLEEVELS AVSEDPHFNP GS*
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