PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21126A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MIKC_MADS

Protein Properties

Length: 259aa MW: 29537.1 Da PI: 9.8466

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21126A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.4	6e-26	19	59	10	50
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +vtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ Oropetium_20150105_21126A 19 TVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 59 7**************************************95 PP
2	K-box	104	1.9e-34	78	171	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ ++ ++++s++qe++kL+++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe +l++ R++K++l++eq+eel++ke+ l Oropetium_20150105_21126A 78 QDANNPLSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLG 161 4444566778************************************************************************ PP K-box 89 eenkaLrkkl 98 e n++L++k+ Oropetium_20150105_21126A 162 EMNRQLKHKV 171 *****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-22	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-25	19	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-22	19	58	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.43E-32	20	79	No hit	No description
PROSITE profile	PS50066	23.072	20	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-19	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-19	39	60	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	4.2E-31	85	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	17.468	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDRDRDARDR LHRATAPSTV TFSKRRNGLL KKAYELSVLC DAEVALIIFS SRGKLYEFGS 60 AGITKTLERY QHCCYNAQDA NNPLSESQSW YQEMSKLRAK FEALQRTQRH LLGEDLGPLS 120 VKELQQLEKQ LECALSQARQ RKTQLMMEQV EELRRKERHL GEMNRQLKHK VILRPKDAAT 180 TEPCNKPPGL LQQLVAPSWN MMAPHFMCSS SSSRRTQLPW TVNPLCKLGF LTISLCHLRQ 240 LPTIFHAVAS QEARAASC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	1e-21	75	171	1	101	Developmental protein SEPALLATA 3
4ox0_B	1e-21	75	171	1	101	Developmental protein SEPALLATA 3
4ox0_C	1e-21	75	171	1	101	Developmental protein SEPALLATA 3
4ox0_D	1e-21	75	171	1	101	Developmental protein SEPALLATA 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269\|PubMed:19820190, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21126A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496648	1e-177	GQ496648.1 Eleusine indica AGL6-like MADS box transcription factor (AGL6) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002454472.1	1e-101	MADS-box transcription factor 6
Refseq	XP_015688949.1	1e-101	PREDICTED: MADS-box transcription factor 6
Refseq	XP_025791343.1	1e-101	MADS-box transcription factor 6
Swissprot	Q6EU39	1e-101	MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBL	A0A2S3GS37	2e-99	A0A2S3GS37_9POAL; Uncharacterized protein
TrEMBL	A0A2T7FAG8	2e-99	A0A2T7FAG8_9POAL; Uncharacterized protein
TrEMBL	C5Y0X9	2e-99	C5Y0X9_SORBI; Uncharacterized protein
STRING	Pavir.Aa00924.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4187	35	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-70	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21126A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li H, et al. The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice. Cell Res., 2010. 20(3): p. 299-313 [PMID:20038961] Zhang J,Nallamilli BR,Mujahid H,Peng Z OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa). Plant J., 2010. 64(4): p. 604-17 [PMID:20822505] Seok HY, et al. Rice ternary MADS protein complexes containing class B MADS heterodimer. Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604 [PMID:20888318] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Yadav SR,Khanday I,Majhi BB,Veluthambi K,Vijayraghavan U Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility. Plant Cell Physiol., 2011. 52(12): p. 2123-35 [PMID:22016342] Duan Y, et al. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Mol. Biol., 2012. 80(4-5): p. 429-42 [PMID:22933119] Conrad LJ, et al. The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice. Plant J., 2014. 80(5): p. 883-94 [PMID:25279942] Zhang J, et al. Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice. J. Exp. Bot., 2015. 66(1): p. 99-112 [PMID:25324400] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119] Zhang B, et al. A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.). PLoS Genet., 2016. 12(7): p. e1006152 [PMID:27367609]