 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_21050A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 220aa MW: 24634.1 Da PI: 4.94 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_21050A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.5 | 1.3e-19 | 76 | 129 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+++Le++Fe +++++ e++e++A+ l+L rqV vWFqNrRa++k
Oropetium_20150105_21050A 76 KKRRLAADQVRALERCFEVDNKLDPERKERIARDLRLHPRQVAVWFQNRRARWK 129
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.8 | 3.9e-40 | 75 | 167 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
ekkrrl+++qv++LE++Fe ++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++
Oropetium_20150105_21050A 75 EKKRRLAADQVRALERCFEVDNKLDPERKERIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRHECDELRRDK 158
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreelke 93
++L++e++e
Oropetium_20150105_21050A 159 DALAAEIRE 167
****99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MKRPACRGSS VVSQETQERQ EDTSSRFMEQ QGLDVNDGTV SAAERNNEAA YDDEEEEEDV 60
DDGEPAAWGR GGLGEKKRRL AADQVRALER CFEVDNKLDP ERKERIARDL RLHPRQVAVW 120
FQNRRARWKT KQIERDFAAL RARHDALRHE CDELRRDKDA LAAEIRELRE KVEKQMAVKL 180
ESSAEDRLLP AAAGAGAAAA AAATAVYKAP DGSTDSDSSA
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 123 | 131 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099753 | 1e-109 | FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence. |
