PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20973A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 95aa    MW: 10266.6 Da    PI: 7.3648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20973AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0722611554
                               HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               +i +  ++L+ llP+a   +s ++  a++L++++ YI+sL
  Oropetium_20150105_20973A 22 QISDLVAKLQALLPEARLRSSDRVPSATVLQETCSYIRSL 61
                               789999*********8899999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.648761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-82179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-42261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRPRSRA AGAGATRISD EQISDLVAKL QALLPEARLR SSDRVPSATV LQETCSYIRS  60
LHREVDDLSD RLSDLLDTAD VSTAQAAIIR SLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20973A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983143.13e-42transcription factor ILI7
RefseqXP_025797606.13e-42transcription factor ILI7
SwissprotA2Z7301e-39ILI7_ORYSI; Transcription factor ILI7
SwissprotQ338G61e-39ILI7_ORYSJ; Transcription factor ILI7
TrEMBLA0A2S3IMI68e-41A0A2S3IMI6_9POAL; Uncharacterized protein
TrEMBLA0A2T7C6W68e-41A0A2T7C6W6_9POAL; Uncharacterized protein
TrEMBLA0A3L6SFA98e-41A0A3L6SFA9_PANMI; Transcription factor ILI7
TrEMBLK4AH628e-41K4AH62_SETIT; Uncharacterized protein
STRINGPavir.Ia01776.1.p2e-43(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-23bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]