PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20688A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 273aa    MW: 29814.1 Da    PI: 7.8698
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20688AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-053886254
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               +  + erE+  Rd++N+ f eL ++l  +     +   Ka+iL  A + +++L
  Oropetium_20150105_20688A 38 KNHKAEREKLKRDQLNDLFLELSSMLDLD----RQNSGKASILGDAARVLRDL 86
                               677899********************997....45566788888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.0E-834104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1134100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-43491No hitNo description
PROSITE profilePS5088811.0843686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-44292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVAETESSDS LPGSSNATAD KPVNGHSDQR SQEKTPKKNH KAEREKLKRD QLNDLFLELS  60
SMLDLDRQNS GKASILGDAA RVLRDLVTQV ESLRKEQSAL LAERQYVSSE KNELLEENTT  120
IKARISELQN ELRTRMGNNS ISLSSIGMSH AMANATNPSL PTQPMQHQLW SSIPNLSSVP  180
MTHATHTVSP LHSQQHRPAV VGQVHESRPQ ELQLFPGTSS LAERECANLR SAPTSTSSMT  240
DPLPGQLQLS LPQSSQGGSS SSASRSRTER KY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20688A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826529.11e-119transcription factor BHLH062-like isoform X1
TrEMBLA0A0A9CGL01e-134A0A0A9CGL0_ARUDO; Uncharacterized protein
STRINGPavir.Ha00418.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-35bHLH family protein