PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20385A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29005.3 Da PI: 9.303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.8e-13 | 74 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+llP+a +++Ka+ L ++v+++++L Oropetium_20150105_20385A 74 RSHSEAERKRRQRINAHLATLRTLLPSA-----SRMDKAALLGEVVRHVREL 120 58*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.815 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-11 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.37E-12 | 74 | 123 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-13 | 74 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-11 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 8.0E-5 | 175 | 218 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MSLVASPGAP RRAGSIDRSP LPFYTPGPAT FPLPVLWLVD EGGEEARGRE GGMATDGECS 60 TPASAAARKG PAVRSHSEAE RKRRQRINAH LATLRTLLPS ASRMDKAALL GEVVRHVREL 120 RAKASVAAAT EGVLLPGEGD EVGVVVEDDD DHYHHHCYGG AAAAGRHPRR VRAWVCCADR 180 PGLLSDLGRA VRSASAHPVR AEIATVGGRT RSVMELXXXX XXXXXXGRAE ALSTLRAVLR 240 SVLLDGAREE HLAAGADGYK RPRFSAQIGE VQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20385A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727968 | 4e-51 | KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444528.1 | 9e-74 | transcription factor bHLH30 | ||||
TrEMBL | A0A0E0ESZ9 | 6e-73 | A0A0E0ESZ9_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI09G10040.1 | 1e-73 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20385A |