PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20378A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

ZF-HD

Protein Properties

Length: 298aa MW: 31264 Da PI: 7.1688

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20378A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.6	5.5e-32	69	124	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ Oropetium_20150105_20378A 69 GTRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESSG 124 679***********************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.3E-29	70	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.4E-30	71	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	72	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-23	72	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.79E-21	221	293	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-32	225	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-25	232	288	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDLDFDEQDD GDEEMPPIPV SSSYDPPMML PGMVLGGGSG SGVTPKPADS GGGSFRTPQG 60 GGGGGGAAGT RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK 120 ESSGSSPTAP AEPAAALSPA AITAYGGAAT TQHQFSPYYR TPAGYFYHHQ QQLAAAGHMQ 180 QRALALPSTS HYSEGDDMSG GMIGPMVVAP PMVQGMGMSF GLGGGGPSGS GRKRFRTKFT 240 QEQKDRMLAF SERLGWRIQK HDEAAVQQFC EEVGVKRHVL KVWMHNNKHT LGRKPLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-29	233	290	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20378A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963277	1e-85	EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149424.2	1e-131	uncharacterized protein LOC100283050
Swissprot	Q6YXH5	1e-109	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1D6KLI5	1e-130	A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein
TrEMBL	A0A317YC70	1e-130	A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2
STRING	GRMZM2G346920_P01	1e-130	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	8e-52	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20378A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]