PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20373A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 365aa    MW: 38238.7 Da    PI: 8.6235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20373AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12121172155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++ + ++ Lr+++P++   + ++ + a+i   A++Y+k+L+
  Oropetium_20150105_20373A 121 QRMTHIAVERNRRRQMSEYLAVLRSVMPPS---YVQRGDQASIIGGAINYVKELE 172
                                79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16119184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12119176No hitNo description
PROSITE profilePS5088815.301120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALEAVVSSE GLFGCGAMAA SAGGGWSLGH GGHGGVDVEM DLEESSATAT CDVGAYSSML  60
VAAQGVDEPA GSSAVPTLGG NASAAGAKFT QEMSPAPLPA AGRRKRPRSR SVKNREEAES  120
QRMTHIAVER NRRRQMSEYL AVLRSVMPPS YVQRGDQASI IGGAINYVKE LEQLVQSLEA  180
RKHARNSLSS SSPGAAAAMT PCFAASFTFP QYLMSAVATN AAPPVNVVGG XXXXXXXXXX  240
XXAALGSRPS SVANVEVTMV ESHANLKVLS RRRPRQLLRV VTGLQGHRLT VLHLNVASAG  300
PMALYSLSLK VEDDCRLSSV DDIASAVXXX XXXXXXXEKG QPLLDGAAEP GPSETTKRNN  360
SSRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121132RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20373A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660228.17e-95PREDICTED: transcription factor bHLH94
SwissprotQ9C7T41e-60BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3L6RF591e-106A0A3L6RF59_PANMI; Transcription factor bHLH94-like
STRINGOPUNC08G16410.13e-95(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]