PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HD-ZIP

Protein Properties

Length: 271aa MW: 29240.5 Da PI: 4.4885

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20362A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	47	100	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++keq+++Le+ Fe ++++ e++e+LA+ lgL+ rqV vWFqNrRa++k Oropetium_20150105_20362A 47 KKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWK 100 45689************************************************9 PP
2	HD-ZIP_I/II	128.6	2.6e-41	46	138	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrlskeqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktk+lE+dy aL ++ydal++++++L++++ Oropetium_20150105_20362A 46 EKKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWKTKRLERDYVALCHSYDALRADHDALRRDK 129 69******************************************************************************** PP HD-ZIP_I/II 85 eeLreelke 93 ++L e+ke Oropetium_20150105_20362A 130 DALLVEIKE 138 *999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-20	39	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.702	42	102	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	45	106	IPR001356	Homeobox domain
CDD	cd00086	1.02E-19	47	103	No hit	No description
Pfam	PF00046	5.6E-17	47	100	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-20	48	108	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	73	82	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	77	100	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	82	98	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.3E-14	102	143	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MKRPSGSRSG GLLSMVQSDD GFVGVAVEDE TADEDVVVMP GGCGGEKKRR LSKEQVRALE 60 RSFETENKLE PERKERLARD LGLQPRQVAV WFQNRRARWK TKRLERDYVA LCHSYDALRA 120 DHDALRRDKD ALLVEIKELK GKLGDEDAVA SFSSVKEEPV ASDLEPPAAA TAAQGSSESD 180 SSGVVNDAET GGPEKAAPTA APTVAEAEAV VPGTAALRGE VFFHAQLLKV EDEEAAFLGD 240 DDAACGGFFA DLQPPPSLPW WTEPVEHWAA *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20362A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822160.1	1e-119	homeobox-leucine zipper protein HOX20-like
Swissprot	A2YWC0	1e-108	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	1e-108	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	A0A2S3I3D9	1e-117	A0A2S3I3D9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7D8P0	1e-117	A0A2T7D8P0_9POAL; Uncharacterized protein
STRING	OBART08G18330.1	1e-111	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-43	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20362A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]