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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Oropetium_20150105_20352A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
Trihelix |
Protein Properties |
Length: 313aa MW: 34952.9 Da PI: 10.3743 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_20352A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 62.1 | 1.3e-19 | 24 | 110 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsesss 77
W++ e+++Li+a+++++++lrrg+lk+++Weev++ + + +++ +qC++k+e+l+kry+ + ++ s
Oropetium_20150105_20352A 24 WSHVETMHLIDAYEDRWTALRRGQLKAHQWEEVAAEVaarcaatpGAAVQRKTGTQCRHKLEKLRKRYRTEGARPVT------S 101
*************************************999999855555566*****************98877764......6 PP
trihelix 78 tcpyfdqle 86
+pyf+++e
Oropetium_20150105_20352A 102 LWPYFRRME 110
8*******8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MMAQEADESP RGPAAKKSAP AQPWSHVETM HLIDAYEDRW TALRRGQLKA HQWEEVAAEV 60 AARCAATPGA AVQRKTGTQC RHKLEKLRKR YRTEGARPVT SLWPYFRRME RLERGPGHVS 120 AYPPVADSSP TAASDEEXXX XXXXXXXXXQ ELVPRNNNTR SINGIIREFG SGLAPRHPQL 180 QQLTPSITPS TAPPRKRVSY EAFQAAAAAA AATEAGKAKE GEVEMVRRPF GSGGTNAELS 240 XXXXXXXXXX MRLERRRMEV QWEIEQGWKQ TEARQTRMLQ DAQRQLRDTI AATCAVPPKK 300 ARRDHGNNGD GF*
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