PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 92aa MW: 10405.1 Da PI: 10.8373

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20313A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.3	1.7e-27	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie+++nrqvtfskRrng+ KKA+ELSvLCd++va++ fs++g+l +s Oropetium_20150105_20313A 10 RIESNTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLTFSPSGRLSHFS 58 8********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.6E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.202	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-26	1	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.06E-33	2	86	No hit	No description
PRINTS	PR00404	8.0E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.0E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MGRVKLPIRR IESNTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLTFSP SGRLSHFSGR 60 RHGPVVHAVL FFAVEDVVLR YMNLPEHDRG E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-17	1	59	1	59	MEF2 CHIMERA
6bz1_A	2e-17	1	59	1	59	MEF2 CHIMERA
6bz1_B	2e-17	1	59	1	59	MEF2 CHIMERA
6bz1_C	2e-17	1	59	1	59	MEF2 CHIMERA
6bz1_D	2e-17	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20313A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975181	5e-51	EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883256.1	2e-43	agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	2e-31	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	A2YWK7	2e-42	A2YWK7_ORYSI; Uncharacterized protein
TrEMBL	I1QJS1	2e-42	I1QJS1_ORYGL; Uncharacterized protein
TrEMBL	Q6Z5F8	2e-42	Q6Z5F8_ORYSJ; Os08g0494100 protein
STRING	ORUFI08G21330.2	7e-43	(Oryza rufipogon)
STRING	ORGLA08G0167200.1	4e-43	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	9e-34	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20313A

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]