PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20237A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 124aa    MW: 12960.8 Da    PI: 10.5583
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20237AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP77.52.1e-244088149
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                        SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49
                               +CqvegC+adl+ ak+y+ rhkvC++hsk+p v+v+gleqrfCqqCsr 
  Oropetium_20150105_20237A 40 RCQVEGCNADLTGAKTYYFRHKVCKMHSKTPRVIVAGLEQRFCQQCSRI 88
                               6**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-253388IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.34938115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-233989IPR004333Transcription factor, SBP-box
PfamPF031104.0E-194188IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MATASSGAGG GSGAGGGDDQ LHGLKKGKGV ASSSSQAPAR CQVEGCNADL TGAKTYYFRH  60
KVCKMHSKTP RVIVAGLEQR FCQQCSRISR YTMTFGLNGG YKSFKVGWSI LGHVSVLKTS  120
RLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-1541881158squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20237A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415426.12e-28PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
RefseqXP_009415427.12e-28PREDICTED: squamosa promoter-binding-like protein 14 isoform X2
TrEMBLA0A444CUU64e-29A0A444CUU6_ENSVE; Uncharacterized protein
STRINGGSMUA_Achr9P27660_0013e-27(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2518055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-22squamosa promoter binding protein-like 9