PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20136A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 651aa    MW: 70585.3 Da    PI: 5.2132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20136AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12523568454
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Oropetium_20150105_20136A 523 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 568
                                799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-5360237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39519568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-14522569No hitNo description
SuperFamilySSF474598.51E-18522592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10523568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-18523590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD FPALPWXXXX XXXXXXXXXX XXXQQQQMPP AVPGFNQDTL  60
QQRLQAIIEG SRETWTYAIY WQSSLDPATG SSMLGWGDGY YKGCEEDKRK QKPLTPAAQA  120
DQEHRKRVLR ELNSLISGAA DEAVDEDVTD TEWFFLVSMT QAFHNGSGLP GQVLFAGQPT  180
WISSGLSSAP CERARQAYTF GLRTMVCVPV GTGVLELGST DVIFHTAENM AKIRSLFGGG  240
TWQPLQPQPQ QQPAAGADQA ETDPSVLWLT DPPVMDIKDT MSHEISVSKP PPPPQIQFEN  300
PSTSTLTENP SPSVQAPPPP QPAVPVPPXX XXXXXXXXQQ QQGPFRRELN FSEFASNPSL  360
APGPPFFKPE SGEILSFGAD STGRRNPSPA PPAPTASLTT APGSLFSQHT ATMTVAAGND  420
AKNNNNNNNK RSMEATSRAS NTTNLHPASA AANEGMLSFS SAPTTRPSTG TGAPAKSESD  480
HSDLDASVRE VESSRVVAPP PEAEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  540
ALRAVVPNVS KMDKASLLGD AISYINELRG KMTALEADKE TMQSQIEALK KERDARPAAP  600
QGGGGFDAGP RCHAVEIDAK ILGLEAMIRE LMVAREPRMV AGPAQAEVVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-59532372192Transcription factor MYC3
4rqw_B2e-59532372192Transcription factor MYC3
4rs9_A2e-59532372192Transcription factor MYC3
4yz6_A2e-59532372192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1504512KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20136A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335485.10.0myc transcription factor 7
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1D6K9720.0A0A1D6K972_MAIZE; Myc transcription factor7
STRINGGRMZM2G001930_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-70bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]