PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20004A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 467aa    MW: 49527.7 Da    PI: 5.7745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20004AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16282327555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hne Er+RRdriN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Oropetium_20150105_20004A 282 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 327
                                *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.923277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-19280348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-18282337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-18282331No hitNo description
PfamPF000109.5E-14282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-18283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MNQCVPSWDL QDDPAAGTRL NTLPSAALQA AVPMSSDQYY EVAELTWEKG NISSHGLLNR  60
PAPPKYQPPP AASQLQTIGG GGDRETLEAV VGEAAARSSQ HFPRPSLPAT PWLGVGAGAV  120
AAADVGGIGV AERRAATDAL VPCARDEAAV EEKEARRKRA RVEDGGLLVC ASQGSTAPGR  180
RGESATMLAL DAACCGTGPD DVCGFTTTTT NNSTSLDRED DNGSPDTENT SIGGGAASDS  240
RCFSRRSQRD GLCDEAENVV TNGEPAMRSS VSTKRSRAAA IHNESERKRR DRINQKMKTL  300
QKLVPNSSKT DKASMLDEVI EYLKQLQAQV QVMNRMSSMM MPMGMAVPQL QMSVMAQMAQ  360
MAQMAQMAQG MMNMGSLAQP GYAPPPMMHP PHFIPMPSWD AAAGPSSGAG AVADRAVQPD  420
AFAAFLACQQ AQQNGQQPGS MEAYNRMLVM CQKLNQQQQQ PSNSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20004A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658346.11e-153transcription factor UNE10 isoform X3
TrEMBLA0A368SN181e-149A0A368SN18_SETIT; Uncharacterized protein
STRINGOMERI10G14760.11e-152(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-41bHLH family protein