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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19790A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27692.6 Da PI: 7.3477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.6 | 5.2e-14 | 145 | 191 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR+++N+ f L+++lP+ +K++Ka+iL +++ Y+k+L Oropetium_20150105_19790A 145 KNHVISERKRREKLNDMFMVLKSMLPTI-----RKMDKASILAETIAYLKDL 191 6899***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.03E-14 | 141 | 196 | No hit | No description |
PROSITE profile | PS50888 | 16.971 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-18 | 142 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 145 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-17 | 145 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-15 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLDDLDQDPQ DTVMAEGHDI GEVDCRFRNK LEQIIKEFND LCNNGPWEEL DMQPLQHSRW 60 IMDDCSSLVE TPLASKDDAT LSTTGNCSQM TSFITWTRFQ SDQRAVPVIG EPQKLLKKVV 120 AGRPRTTIDN DGAITTRSTQ ESRMKNHVIS ERKRREKLND MFMVLKSMLP TIRKMDKASI 180 LAETIAYLKD LKLKVEELES RREPIITSLN EQSERCQDSQ ITGNGKRVPA RAKRKKGLQA 240 QQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 146 | 211 | 8 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 155 | ERKRRE |
2 | 151 | 156 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19790A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | P13027 | 9e-36 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | A0A1E5W2E8 | 1e-55 | A0A1E5W2E8_9POAL; Anthocyanin regulatory R-S protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 9e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19790A |
Publications ? help Back to Top | |||
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