PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19695A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26508.3 Da PI: 8.2123 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.7e-05 | 13 | 61 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ +++ Oropetium_20150105_19695A 13 RKVHKAEREKLKRDNLNDLFVELGDMLDED----RQNNGKACILADTTRILRD 61 678889*********************997....4556666677666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-10 | 9 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-12 | 9 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.55 | 12 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
PVAGKKIQKK APRKVHKAER EKLKRDNLND LFVELGDMLD EDRQNNGKAC ILADTTRILR 60 DLLSQVESLR MENSTLQNES HYVTMERDEL RDETSALGKE ILELQNELRM RLSXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXPL QQPRSSTAVI ELPYVAAPRE LKLFPRAGYE 180 PAKDKEATNH VTRPQARYPM QAASWPVNLF SGLPRMEDEQ CSSTTTGSGS SK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19695A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148562.1 | 8e-89 | amelogenin precursor like protein | ||||
Refseq | XP_008676027.1 | 8e-89 | amelogenin precursor like protein isoform X1 | ||||
Refseq | XP_008676033.1 | 8e-89 | amelogenin precursor like protein isoform X1 | ||||
Refseq | XP_008676036.1 | 8e-89 | amelogenin precursor like protein isoform X1 | ||||
Swissprot | Q69V10 | 7e-69 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | B6T4L8 | 2e-87 | B6T4L8_MAIZE; Amelogenin like protein | ||||
TrEMBL | B8A2P8 | 2e-87 | B8A2P8_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G350312_P02 | 3e-88 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19695A |
Publications ? help Back to Top | |||
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