PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB

Protein Properties

Length: 283aa MW: 30246.2 Da PI: 7.1777

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_19692A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v++ G+g+W++++++ g+ R+ k+c++rw +yl Oropetium_20150105_19692A 14 KGPWTPEEDLVLVSYVQENGPGNWRAVPAKTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.9	1.6e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++Ed l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Oropetium_20150105_19692A 67 RGGFSEQEDRLIVHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112 7889****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.814	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.10E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.673	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	65	117	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.43E-12	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGRPPCCHKA GVKKGPWTPE EDLVLVSYVQ ENGPGNWRAV PAKTGLMRCS KSCRLRWTNY 60 LRPGIRRGGF SEQEDRLIVH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLWELR 120 LQTDIDLARR ALREALSVDA AAHHPCPPPR TTTTTIVKST AAALADEPAA AQAPQPPYVG 180 LSACNVSVML DAWAPPPRAA ESASGSSSEH TDCSAAAGGS ASSASDCPGA TLAVKQDDEV 240 PLSAIESWLL GGDDGGEQLQ QLLVAHQAGL LRDAAALHSF AF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-28	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_19692A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962848	1e-135	EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794825.1	1e-104	transcription factor MYB30-like
Swissprot	P81392	5e-82	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A0A9DP43	1e-106	A0A0A9DP43_ARUDO; Uncharacterized protein
STRING	OPUNC03G18230.1	1e-101	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	6e-80	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_19692A

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]