 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_19666A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 346aa MW: 37251.3 Da PI: 6.2992 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_19666A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl
Oropetium_20150105_19666A 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 54 | 3.9e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +++eE++l+++++ +lG++ W+ Ia+ ++ gRt++++k++w++y
Oropetium_20150105_19666A 67 RGTFSQEEEDLIIQLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111
899*******************.*********.************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60
LRPDLKRGTF SQEEEDLIIQ LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRERG 120
IDPATHKPLA AVDAGGGGGD VVVSASCRAV FCDTELIIPQ PPPPTTPLQQ APLPAEPMLD 180
DGGGVVKLPL VDWTTTAGYL QLQAGCTTFD MVDALALQQQ QQRCGGGGAI PAPLPVVVPS 240
SASCSSTLTS TIMAGDAEHC DNNANNLPWL ELGPNAAGQH VVVDSYAGAL DELRWSEYFD 300
GAFQAAASQQ GALMMQGQCV YGGGNKDDVA VAAQQIDVHG LRNWC*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036535 | 1e-164 | BT036535.2 Zea mays full-length cDNA clone ZM_BFb0120O20 mRNA, complete cds. |
| GenBank | BT041077 | 1e-164 | BT041077.1 Zea mays full-length cDNA clone ZM_BFc0171O14 mRNA, complete cds. |
| GenBank | EU955434 | 1e-164 | EU955434.1 Zea mays clone 1532080 myb-related protein Hv33 mRNA, complete cds. |
| GenBank | KJ727496 | 1e-164 | KJ727496.1 Zea mays clone pUT5355 MYB transcription factor (MYB156) mRNA, partial cds. |
