PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

M-type_MADS

Protein Properties

Length: 67aa MW: 7430.66 Da PI: 11.3251

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_19139A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.7	2.1e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+lye+ss Oropetium_20150105_19139A 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYEFSS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.268	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.29E-29	2	63	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.11E-38	2	64	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-30	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVFSS TGRLYEFSST 60 KVQGWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-20	1	62	1	62	MEF2C
5f28_B	3e-20	1	62	1	62	MEF2C
5f28_C	3e-20	1	62	1	62	MEF2C
5f28_D	3e-20	1	62	1	62	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269\|PubMed:23463009}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_19139A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC185486	5e-69	AC185486.5 Zea mays BAC clone CH201-162J17 from chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021315544.1	5e-35	MADS-box transcription factor 57-like isoform X3
Refseq	XP_021315545.1	5e-35	MADS-box transcription factor 57-like isoform X4
Refseq	XP_025878665.1	8e-36	MADS-box transcription factor 57 isoform X3
Swissprot	Q6Z6W2	1e-35	MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBL	A0A0E0CR15	9e-35	A0A0E0CR15_9ORYZ; Uncharacterized protein
TrEMBL	K3Z019	2e-35	K3Z019_SETIT; Uncharacterized protein
STRING	OMERI02G29310.1	1e-35	(Oryza meridionalis)
STRING	Si019880m	4e-36	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	7e-34	AGAMOUS-like 44

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_19139A

Publications ? help Back to Top
Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]