PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19069A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 344aa    MW: 35806.3 Da    PI: 6.2312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19069AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438e-14135185255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Oropetium_20150105_19069A 135 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 185
                                689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-17133204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-13135189No hitNo description
Gene3DG3DSA:4.10.280.102.5E-13135196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-11135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-12139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGDGLCELLV DDRCELLQHV SSDAQDLFSI LETWEECMNG GVPPGGGAVA AAATPTASST  60
SAFSPSSMTP ADGSAAAGGD AGPATTTTPT GNGRRRSSFI DEASNKSGGG APVQKKQKGT  120
ASDGAAGADD DGAVKMSHIA VERNRRKQMN EHLAVLRSLM PCFYVKRGDQ ASIIGGVVDY  180
IKELQQVLRS LEAKKNRKAP PAHPAAAAAY VMASSSPAMT PTTSSSSSYH SSSHDQQHHH  240
SPTLDSIVTE LAAHAAAARP AVALPDVKVE FAGPNLVLKT VSRRAPGQVL KIIAALESLS  300
LEILHVSVST VEDTMVHSFT IKIGIECELS AEELVQEIQR TFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193117RRRSSFIDEASNKSGGGAPVQKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19069A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9758961e-67EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-127transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE71e-127A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Aa02723.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.17e-34bHLH family protein