PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19060A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 328aa    MW: 35831.7 Da    PI: 7.6542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19060AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                y   +C+++ +tG+C yGd+CkF+H+
  Oropetium_20150105_19060A 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-13253313IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.81E-13262305No hitNo description
PfamPF139204.5E-8262303No hitNo description
CDDcd001628.85E-8263304No hitNo description
SMARTSM001842.0E-4263300IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.571263301IPR001841Zinc finger, RING-type
PROSITE patternPS005180278287IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADGGGGEPG TGGGPAPLCN FVRKPPKNIR KRPAAPAGSD DEDDGGAGAL AALRSKKGPS  60
VPGKLVFSST EGSAEPRRFQ YESSRTIQAS TDSRATATLE TETEFDRDAR AIRERQLKQA  120
EESLKKNPSA SASASASGEV YKGINAYTDY KAGFRREHTV SSEKAGGSHG PLRASAHIRL  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWEEAEK ARKRRIAMGG  240
GDGSDDEAAD DDDDDEEALP FACYICRQPF VDPVVTKCKH YFCEHCALKH HSKNKKCFVC  300
NKPTLGMFNA AQEIRKKMAQ DKKQQEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6381327100326RING finger protein 113A
5z58_M5e-6381327100326RING finger protein 113A
6ff4_t5e-6381327100326RING finger protein 113A
6ff7_t5e-6381327100326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19060A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-171C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6JMH30.0A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBLA0A453IHI90.0A0A453IHI9_AEGTS; Uncharacterized protein
STRINGEMT145290.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]