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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_19015A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
G2-like |
| Protein Properties |
Length: 395aa MW: 43991.9 Da PI: 7.0267 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_19015A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 100.4 | 1.2e-31 | 106 | 159 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
Oropetium_20150105_19015A 106 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 159
8****************************************************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MVARADQLMV REVTGKQVLE VLEDEEERSM DHNKQALDLN DAVMSEEGEV GDEDDEDDGG 60
STSDAAGSRS SSNNSSTNNK DSESKPKGDG EKRVPSVRPY NRSKLPRLRW TPDLHMAFVH 120
AVERLGGQER ATPKLVLQMM NVRGLSIAHV KSHLQMYRSK KLDQDGRPRG ALSSSVYSPM 180
DFHFMRGDRR FHNMSFLQRA ATLSSSSFGP EHGGFFASRN GGRPEVSRLY GLLQHQQPQM 240
QSFNFRSSRF RRHEWSLNQR EESTITRKEI LKQPSQPQPF ASSPALIRSE RRWWPFTDDA 300
GAAVTAAGGE QAIMVDRGRD VIDSGDSIGS RSRLLSVAVS GERHLPFRWL PGTGSDVVGH 360
VSNITTIKRS SDPVVIDEAP DAQELEVYLI SPPH*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 4e-18 | 107 | 161 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 4e-18 | 107 | 161 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 4e-18 | 107 | 161 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 4e-18 | 107 | 161 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005613 | 1e-39 | AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09. |
| GenBank | AP014958 | 1e-39 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-39 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
