PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18828A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 181aa    MW: 19724.9 Da    PI: 6.3005
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18828AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006495117123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C  Cg  Fs    L  H+r+H
  Oropetium_20150105_18828A  95 HECAVCGLEFSMGQALGGHMRRH 117
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-54976No hitNo description
PfamPF139125.1E-115174IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.1385279IPR007087Zinc finger, C2H2
SMARTSM003550.45274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-692122No hitNo description
Gene3DG3DSA:3.30.160.601.2E-493122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-1194119IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.21795122IPR007087Zinc finger, C2H2
SMARTSM003550.8995117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTLTRQEAEE SKEMEGLRVH AESLLSLSXX XXXXXXXXXX XSRKAMAAEG VFECKTCRKQ  60
FPSFQALGGH RTSHTRLQAR MLNDPPPQAD RTRVHECAVC GLEFSMGQAL GGHMRRHRGE  120
APPMADAHQE LQEAGMPDLN FPPLEDGGGD GQPQEHQDQP TSGGGGDRKS SGPQLLNLLV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18828A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720669e-67AK372066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.11e-64zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN83e-63A0A2S3HQN8_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEP53e-63A0A2T7DEP5_9POAL; Uncharacterized protein
STRINGBRADI2G54500.12e-58(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-24C2H2 family protein