 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_18795A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NF-YB |
| Protein Properties |
Length: 173aa MW: 18618.7 Da PI: 5.7253 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_18795A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 160.7 | 2.1e-50 | 17 | 120 | 1 | 94 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse..........asdkcqrekrktingddllwalatl 74
vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvts+ asdkcq+ekrktingddllwa+atl
Oropetium_20150105_18795A 17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSDdsdfavgafrASDKCQKEKRKTINGDDLLWAMATL 100
69*********************************************965555555555899********************** PP
NF-YB 75 Gfedyveplkvylkkyrele 94
Gfe+yv+plk yl+kyre +
Oropetium_20150105_18795A 101 GFEEYVDPLKNYLQKYREGD 120
*****************965 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 173 aa
Download sequence Send
to blast |
MADDSGSHDG GGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS 60
FVTSDDSDFA VGAFRASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK NYLQKYREGD 120
SKLSTKAGEG PTKKDAMNPL GGTSSSNNQL VQHGVYNQGM GYMQPQYHNG DA*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1n1j_A | 3e-44 | 18 | 118 | 3 | 93 | NF-YB |
| 4awl_B | 3e-44 | 18 | 118 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 3e-44 | 18 | 118 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB095438 | 1e-65 | AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds. |
| GenBank | AP003271 | 1e-65 | AP003271.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0506B12. |
| GenBank | AP004366 | 1e-65 | AP004366.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0460C04. |
| GenBank | AP014957 | 1e-65 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | AY332466 | 1e-65 | AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds. |
| GenBank | CP012609 | 1e-65 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
