 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_18649A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 528aa MW: 57281.6 Da PI: 4.8948 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_18649A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT Ed lvd+vk++G g+W+++ + g+ R++k+c++rw ++l
Oropetium_20150105_18649A 37 KGPWTSAEDAVLVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 84
79******************************************9986 PP
|
| 2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
Oropetium_20150105_18649A 90 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 133
799*******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway |
| GO:0043068 | Biological Process | positive regulation of programmed cell death |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045926 | Biological Process | negative regulation of growth |
| GO:0048235 | Biological Process | pollen sperm cell differentiation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 528 aa
Download sequence Send
to blast |
MYRLKSEDDC EMVLQDQMDS PVADDGGSPH KGPPLKKGPW TSAEDAVLVD YVKKHGEGNW 60
NAVQKNTGLS RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IIQLHAKMGN KWARMAAHLP 120
GRTDNEIKNY WNTRIKRCQR AGLPVYPASV CHQSPNEDEQ VSDDFNCSEN RASDFMNGDG 180
LLLPDFTSDN VIPDALSYAP QLSAASISNL LGHSFASRSC SFMDQVDQAG ILKQSGSVLP 240
ALSDTVDGVL SSVDHFSNDS EMLKQALGFD YLNEANACSK TAAPFGVALS GSHAFLNGTF 300
SASRPINGPL KMELPSLQDT ESDPNSWLKY AVVPAMQPTE LVDPYLQSAA VTQSVKSECA 360
SPRNSGLLEE LLHEAQVLRS GNNQQLSVRS SSSSAGTPGE TTTAVSPEFD MGQEYWEEHR 420
GSFLNEYTPF SGYSFTESTA PVSAASLQLS KVSPVQSPSM GSGDQVTEHK YKPGGSPHPE 480
NIRPDAFFSG NTADVSIFND AIAMLLGNDI SSTWSNMPHA CEMSEFH*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
