PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18558A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 663aa    MW: 73631.1 Da    PI: 6.824
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18558AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.74.1e-132391956
                               HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               F  + +ps+++r+eL++ +gL+e+qV++WFqN+R+  k
  Oropetium_20150105_18558A  2 FSICAHPSETQRKELSETTGLSESQVRFWFQNKRTHVK 39
                               88899*****************************9766 PP
2START71.42.5e-231443933206
                                HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG....... CS
                      START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke....... 70 
                                a +a  e+v++a+++ p+W + +    e +n + +lq f +++v      ++ea ra +vv  ++ + ve l+d+         
  Oropetium_20150105_18558A 144 ATDAVHEFVTLASSNGPMWWSIPggslETLNMMAYLQAF-SGQVndtrlNKMEATRANTVVMLDSKRIVELLMDVVSvisgtlv 226
                                678999*********************************.55667*************************************99 PP

                                ..........CT.-TT-SEEEEEEEECTT.............................EEEEEEEEXXTTXX-SSX.EEEEEEE CS
                      START  71 ..........qW.detlakaetlevissg.............................galqlmvaelqalsplvp.RdfvfvR 113
                                           W  ++l+++ ++  +++                              gal+l++ el+++ plvp R+ +f+R
  Oropetium_20150105_18558A 227 ddhirylklfLWgMQHLKRMNLIRDLQESygaffpgimsgatttkvynwpsnskasydGALELITVELVFPAPLVPtRKCTFLR 310
                                98887777777733566699999988888889999999999999999999999******************************* PP

                                EEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
                      START 114 yirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
                                +++ l+ g+ +ivd+S d  +          +++  Sg+liep   + +kvt +ehv  ++  +h l+++ + sgl +ga++ v
  Oropetium_20150105_18558A 311 HCKVLEHGVTAIVDISMDDGEG---------CRKMASGLLIEPIRPNSCKVTAIEHVQIEDTGIHDLYKPCL-SGLLFGARRLV 384
                                **************88886655.........889************************************98.699******** PP

                                HHTXXXXXX CS
                      START 198 atlqrqcek 206
                                  + rqc++
  Oropetium_20150105_18558A 385 ISMARQCAR 393
                                999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000868.98E-11139No hitNo description
PROSITE profilePS5007113.362141IPR001356Homeobox domain
SuperFamilySSF466897.52E-11142IPR009057Homeodomain-like
SMARTSM003890.0027145IPR001356Homeobox domain
PfamPF000461.3E-10239IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-11750IPR009057Homeodomain-like
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PROSITE profilePS5084816.787133396IPR002913START domain
SMARTSM002342.7E-5142393IPR002913START domain
SuperFamilySSF559611.37E-10143226No hitNo description
PfamPF018529.3E-14282392IPR002913START domain
SuperFamilySSF559611.37E-10288360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
FFSICAHPSE TQRKELSETT GLSESQVRFW FQNKRTHVKT LSGKEENYRL KMENEILKDE  60
NNKLKQIERT IFCPSCTSEP RQLQILRDFE SLKVENQMME QELARLKSEL PIISPTLSHA  120
FQIESSSENV FVLQDDARKL ALIATDAVHE FVTLASSNGP MWWSIPGGSL ETLNMMAYLQ  180
AFSGQVNDTR LNKMEATRAN TVVMLDSKRI VELLMDVVSV ISGTLVDDHI RYLKLFLWGM  240
QHLKRMNLIR DLQESYGAFF PGIMSGATTT KVYNWPSNSK ASYDGALELI TVELVFPAPL  300
VPTRKCTFLR HCKVLEHGVT AIVDISMDDG EGCRKMASGL LIEPIRPNSC KVTAIEHVQI  360
EDTGIHDLYK PCLSGLLFGA RRLVISMARQ CARMRDVFDV SNSSMSVSTK VRNIIMKMAD  420
TLLANYASSI AGIPVEAWIV QCGEGTEEDI KITYKRNDNM NNTAIVCASA SFLLPVPMKM  480
AFDLLKNNLL RVKWDVLVNG GGIKEEVHVA NGIGSEDSVS ILHIKGNVGT KDTKMILQNS  540
SYDTSGSFLV YSSLDKQLMD MIMSPDNDQE MFNFPTFPTG FSLVPIIDAT QPNFSIGLGE  600
TGATVLTAGF QIPMKLARGT GLSPRSVSSV IRILQDIIGN VKATLMNCHP AFIGGSCLPY  660
RK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18558A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814677.10.0homeobox-leucine zipper protein TF1-like
TrEMBLA0A368RBY60.0A0A368RBY6_SETIT; Uncharacterized protein
TrEMBLK3XF210.0K3XF21_SETIT; Uncharacterized protein
STRINGSi000488m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.17e-91protodermal factor 2