PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18406A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family TALE
Protein Properties Length: 310aa    MW: 33656.8 Da    PI: 6.3537
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18406AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072502832154
                                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Oropetium_20150105_18406A 250 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 283
                                569*****************************87 PP
2ELK26.91.1e-09204225122
                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                ELK++L+++Y+++L+++++E++
  Oropetium_20150105_18406A 204 ELKNELKQGYKEKLVDIREEIL 225
                                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193983IPR005540KNOX1
PfamPF037901.5E-164279IPR005540KNOX1
SMARTSM012563.2E-2593148IPR005541KNOX2
PfamPF037911.6E-15101147IPR005541KNOX2
PfamPF037891.9E-6204225IPR005539ELK domain
SMARTSM011880.0023204225IPR005539ELK domain
PROSITE profilePS5121310.057204224IPR005539ELK domain
PROSITE profilePS5007111.386224287IPR001356Homeobox domain
SMARTSM003892.8E-10226291IPR001356Homeobox domain
SuperFamilySSF466891.15E-15226289IPR009057Homeodomain-like
CDDcd000861.96E-11227288No hitNo description
Gene3DG3DSA:1.10.10.601.5E-24231288IPR009057Homeodomain-like
PfamPF059208.5E-18244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAFHYPDHGL SMDAAAAAAA AAAASSSPNP SGFSPGGGER EKAAIAAHPL YERLLEAHVA  60
CLRVATPVDQ LPRIDAQIAA RPPPLAAAAG AAAAGGPSGG EELDLFMTHY VLLLCSFKEQ  120
LQQHVRVHAM EAVMGCWDLE QSLQTLTGVS PGEGTGATMS DDEDNQVDSE ANMFDGNDGS  180
DGMGFGPLML TEGERSLVER VRQELKNELK QGYKEKLVDI REEILRKRRA GKLPGDTASV  240
LKAWWQAHSK WPYPTEDDKA RLVQETGLQL KQINNWFINQ RKRNWHSNPT SSGEKTKKKR  300
YHKEFAAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280299RKRNWHSNPTSSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18406A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813953.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A2T7F2T60.0A0A2T7F2T6_9POAL; Uncharacterized protein
TrEMBLA0A2T8KU590.0A0A2T8KU59_9POAL; Uncharacterized protein
STRINGGRMZM2G370332_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-144KNOTTED1-like homeobox gene 3