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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_18342A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
Trihelix |
Protein Properties |
Length: 368aa MW: 38778.3 Da PI: 4.1591 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_18342A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 32.3 | 2.5e-10 | 77 | 148 | 1 | 65 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkik 65
+W e+laL++ + +++ +r+ ++ ++W+ v++++ ++rg +r++ +C+ +we l+ +y +++
Oropetium_20150105_18342A 77 EWAPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasdafrARRGSKRTAAECRRRWEALAAEYGAVR 148
5*******************************************************************8776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MDPADPPCII QALRAQPQSS SALPPPRPPL VQALPAKDHP LAAAAASSVS RSPKRRPPPA 60 GPAPPSPRRT RSGGAPEWAP AETLALVAEV AAVDDGWSRS VSAFQKWAMV AENLAASDAF 120 RARRGSKRTA AECRRRWEAL AAEYGAVRRA GDAYWEMTAA TRSKAGLPAR FDAEVYGAMD 180 ALIRVEEALL ADAVGSATGV EAVEGLVGGG GAGGGDVGEE EDGGEAEVGE DELNKDDESA 240 DEEEEDDGDE GEEDEEEMQA DAGNADDASN DSEGQEGKAN NKTENSQNIA WELANKLQES 300 AQHIHTVLNE EADGQNRAFA YSTPLHAMTT TRQKADELIK SLGGLLGYLN QFTELIKETG 360 FENVGMT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034113 | 4e-61 | BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds. |
GenBank | BT085710 | 4e-61 | BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds. |
GenBank | EU969957 | 4e-61 | EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G31270.1 | 2e-13 | sequence-specific DNA binding transcription factors |