PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18339A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 367aa    MW: 41234.5 Da    PI: 9.4303
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18339AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-334195155
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  Oropetium_20150105_18339A 41 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 95
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3473898IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-323896IPR009057Homeodomain-like
SuperFamilySSF466891.68E-164096IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-234196IPR006447Myb domain, plants
PfamPF002491.2E-74393IPR001005SANT/Myb domain
PfamPF143793.3E-19153191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFPSSKKATN SAAAAAAVSS NDRPMCVQQG DSGLVLTTDP KPRLRWTVEL HERFVDAVTQ  60
LGGPDKATPK TIMRVMGVKG LTLYHLKSHL QKFRLGKQPH KEFNDHSVKD AAAMEMQRNA  120
ASSSGMMGRS MNEVLMTFHF FHLFLNLNFS RNHMNEAIRM QMEVQRRLHE QLAVQKHLQI  180
RIEAQEKYMQ SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LDVCSLKDIG PSMGFPSLQD  240
LNMFGGHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG DEEGKRDHLQ  300
MAPPMVDGGI DVMDSIADVY CDAKPMMSGD STGSKGFDGK LERPSPRRRM GSPSLIGGQA  360
RNLSYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-194197157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18339A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9616131e-110EU961613.1 Zea mays clone 237034 mRNA sequence.
GenBankKJ7280521e-110KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799290.11e-154myb family transcription factor APL
TrEMBLA0A2S3GLK61e-153A0A2S3GLK6_9POAL; Uncharacterized protein
TrEMBLA0A2T7F2K41e-153A0A2T7F2K4_9POAL; Uncharacterized protein
STRINGPavir.Aa03369.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.22e-72G2-like family protein