 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_18339A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
G2-like |
| Protein Properties |
Length: 367aa MW: 41234.5 Da PI: 9.4303 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_18339A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 106.8 | 1.2e-33 | 41 | 95 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
Oropetium_20150105_18339A 41 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 95
79****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MFPSSKKATN SAAAAAAVSS NDRPMCVQQG DSGLVLTTDP KPRLRWTVEL HERFVDAVTQ 60
LGGPDKATPK TIMRVMGVKG LTLYHLKSHL QKFRLGKQPH KEFNDHSVKD AAAMEMQRNA 120
ASSSGMMGRS MNEVLMTFHF FHLFLNLNFS RNHMNEAIRM QMEVQRRLHE QLAVQKHLQI 180
RIEAQEKYMQ SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LDVCSLKDIG PSMGFPSLQD 240
LNMFGGHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG DEEGKRDHLQ 300
MAPPMVDGGI DVMDSIADVY CDAKPMMSGD STGSKGFDGK LERPSPRRRM GSPSLIGGQA 360
RNLSYG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 6e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 6e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 6e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 6e-19 | 41 | 97 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU961613 | 1e-110 | EU961613.1 Zea mays clone 237034 mRNA sequence. |
| GenBank | KJ728052 | 1e-110 | KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds. |
