PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18237A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 795aa    MW: 87587.6 Da    PI: 5.6013
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18237AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23129230199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +g
  Oropetium_20150105_18237A 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAG 210
                                99*****************************85545444..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+++F   ++++ +l+++++r+
  Oropetium_20150105_18237A 211 DSIIFI--WNDNNQLLLGIRRA 230
                                ******..7777778***9997 PP
2Auxin_resp116.42.5e-38255338183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++++sdld+ rWpnS+Wrs+k
  Oropetium_20150105_18237A 255 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITAISDLDSERWPNSHWRSVK 338
                                79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-47116258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-42120244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-21128229No hitNo description
PROSITE profilePS5086312.506129231IPR003340B3 DNA binding domain
PfamPF023621.5E-21129230IPR003340B3 DNA binding domain
SMARTSM010191.0E-24129231IPR003340B3 DNA binding domain
PfamPF065071.2E-33255338IPR010525Auxin response factor
SuperFamilySSF542779.81E-7658736No hitNo description
PROSITE profilePS5174522.836661745IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MQLSPSNMPE ESPESEGEQR CLNSELWHAC AGPLVSLPVV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADT ETEEVYAQMT LQPLSPEEQK EPFLPIELGA  120
ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN NQLLLGIRRA NRPQTVLPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFII PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITA ISDLDSERWP NSHWRSVKVG WDESTAGEKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPSMHDMF NGGKSDDFAR YSSLMWLRDG NRGAQSLNFQ  420
GLGVSPCVQP RLDYPLLGLK PDSYQQMAAA ALEEIRSGDH LKQTSDLLPV QQTQNLNGGL  480
NTLYGNPQNI LEGNSGPGLN MQNSTHNFSC QESSYLQSLP RNGQIMASEG WPSKRLAVDA  540
LINLEAQSVQ PKHERVNHQI NMPNISGTLS PLSVRHGPSA QGCGAESQLL SSSFAISDGL  600
TTVRNAGIGS GTDSITIASL RSDMDLLAEN SMATSGCLGE SRTFSSLDDI CGGNGNPPPG  660
GTFVKVYKSG SLGRSLDITR FSSYYELRSE LERLFGLEGQ LEDPVRSGWQ LVFVDREDDI  720
LLVGDDPWQE FVNSVWCIKI LSPQDVQQMV RNGEGLLSAA GARMLQGSVC DDYPVNHDLQ  780
NLTGNIAPVV PLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622235951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18237A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024992699.10.0auxin response factor 6
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A1D6MWI40.0A0A1D6MWI4_MAIZE; Auxin response factor
STRINGGSMUA_Achr5P02450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]