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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_18218A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 316aa MW: 33774.6 Da PI: 8.9553 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_18218A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.8 | 2.1e-53 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhP+deel+++yL +kv+gk ++ ++ + +vd++kvePwdLp++++ ++kewyfFs +d+kyatg+r+nrat sgy
Oropetium_20150105_18218A 14 LPPGFRFHPRDEELICDYLVPKVSGKVgFSGHHPpMVDVDLNKVEPWDLPATASVGSKEWYFFSLKDRKYATGQRTNRATVSGY 97
79************************986665556***************8888899*************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wkatgkd+ v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
Oropetium_20150105_18218A 98 WKATGKDRMVAR-RGALVGMRKTLVFYQGRAPKGKKTEWVMHEYRM 142
**********99.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MSSVSFLSMV EAALPPGFRF HPRDEELICD YLVPKVSGKV GFSGHHPPMV DVDLNKVEPW 60
DLPATASVGS KEWYFFSLKD RKYATGQRTN RATVSGYWKA TGKDRMVARR GALVGMRKTL 120
VFYQGRAPKG KKTEWVMHEY RMEGPEPSPR TSLKEEDWVL CRVICKKKSA LGGATSKPAR 180
GLTANGHDAA ATTTSPPLPP LMDTTLAQLH AAMNTAGAGA GAIEQVPCFS SFNSIAGNSN 240
NAAAGAQPCY LPMATGSNGM MSYLDSGLPE LGSCYDPLNS DKKLLKAVLS QLGGEVGPGL 300
SPDLAAASST WMNHF*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 8e-53 | 9 | 170 | 15 | 172 | NAC domain-containing protein 19 |
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