PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18212A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 437aa    MW: 47302.5 Da    PI: 6.8251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18212AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17258304455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Oropetium_20150105_18212A 258 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 304
                                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-21251311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.84E-19251308No hitNo description
SuperFamilySSF474597.72E-21252314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-14258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-19260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNQFVPDWTN NMGDAFAPLG GEDDGLMELL WCNGHVVMQS QAPPRKPPPR CFDKEAPAQQ  60
EQDNAAWFQY PVEDQLERDL FSELFGETPA DACKVEEECG AGTTPLMPPP QWPAALKQQR  120
ACAEDAAGVS GCAVDGGCKS APAAAVETAG GGRESSMLTI GSSFCGSNHV QTTTPRAAAP  180
PRTTTADAAT SSSMHQSRRC AAARARPPAA HHRNSKRKQQ RDATETTNED VEFESAVVTC  240
EPQAQKMTTA KRRRAAEVHN LSERRRRDRI NEKMKALQEL IPHCNKTDKA SMLDEAIEYL  300
KSLQLQLQVM WMGGGMAAAA PVMFPGGVHH QYMQRMVGPP HVASMPRMPP FMAPPPPAVQ  360
SQVDHYAXXX XXXXXXXXTA PMGMGFYQQQ NPAPPPQPVV PGGSLPAATV RTSPADSSSH  420
RKHENSSKPD VKDVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251266RRRAAEVHNLSERRRR
2262267ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18212A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558762e-79BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.11e-135transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A2S3HFD21e-135A0A2S3HFD2_9POAL; Uncharacterized protein
STRINGPavir.Cb00224.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-30phytochrome interacting factor 3-like 5