PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18202A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 771aa    MW: 83901 Da    PI: 7.5434
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18202AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR491.2e-15461499240
                        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                ++k+C+CkkskClk+YCeCfaag++Cse C+C++C N+e
  Oropetium_20150105_18202A 461 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNNE 499
                                689**********************************97 PP
2TCR49.21e-15546585140
                        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                ++k+gCnCkks+C kkYCeCf+ g+ Cs +C+Ce+CkN+ 
  Oropetium_20150105_18202A 546 RHKRGCNCKKSSCTKKYCECFQGGVGCSVSCRCENCKNTF 585
                                589***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-17460501IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.795461586IPR005172CRC domain
PfamPF036381.5E-11463499IPR005172CRC domain
SMARTSM011142.6E-16546587IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.1E-11548584IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MDTPDRPRAG AAAGFEDSPV FNFINNLSPI PPPKPSAPTQ CVQLFKSSDL APVSHIFTSP  60
HVNPTKEPKL LIRDDSVQLA QESHSPNSVR TRTGTSSSFR LIRCTDIVSE NQNITCNLND  120
VCVDSSENTS NLQSELPQSI QTGNPSVETD KNQCADDRTD LKISQECQGL VESFILDRNG  180
PNKMDSSHSG ENVHEKKQSE QNDDALATYD ADYMTTHEPN GDMLTLAMPI VAETEATNEA  240
QKTGNAYSLP NDNSGGYYIQ DSAHAPRHYW TGPVDRVAVD NSTPQMLPDS LQDQLILNDQ  300
VGDKLHQPSD YMPTEKNALP QHLRGMRRRS LFNEKAGATN KGANKASDRH LANLTTPKCK  360
LKSNDNSKLR TPPCALPGIG LHLNALAAIP KEKMALQDTQ LTITRCSNLP YHAGFSPPPY  420
EQNIMSHDFA QTTDVVTAED PTGSPKKKRH KSDNGDGDGT SCKRCSCKKS KCLKLYCECF  480
AAGVYCSEPC SCQGCLNNEI NMTTVLSTRQ QIESRNPLAF APKVIRTSEP DQELGDFSNK  540
TPASARHKRG CNCKKSSCTK KYCECFQGGV GCSVSCRCEN CKNTFGQREG VTVSNVGESK  600
LALEENNPCV KEEKCENDTQ LVMYQAVDSD PAKNVLSAPM IVDCRPLATF PPSTSKKPRS  660
STKLSVHSSR ACNTQAPLKP DIVQSPFKNY AEMIFSDSTS DTLKGSSSSP QTSVKVVSPN  720
KKRISPPRIG TGLSPICKSG RKLILKSIPS FPSLGGDINN EDQKNKSAAP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1346558314120Protein lin-54 homolog
5fd3_B2e-1346558314120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18202A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963116.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A368QN900.0A0A368QN90_SETIT; Uncharacterized protein
STRINGSi021159m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-68Tesmin/TSO1-like CXC domain-containing protein