PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18199A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 75aa    MW: 8337.75 Da    PI: 8.664
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18199AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.7e-163166439
                        TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                               ++C+Ckks ClkkYC+Cf+ ++ Cs +CkCedCkN 
  Oropetium_20150105_18199A 31 RKCTCKKSACLKKYCDCFQGKAGCSINCKCEDCKNP 66
                               69*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163415.447168IPR005172CRC domain
SMARTSM011141.2E-122869IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.8E-123165IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MHDALHIEEA IRASGPVRHD LPERSLIDIY RKCTCKKSAC LKKYCDCFQG KAGCSINCKC  60
EDCKNPFGRK GKAF*
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18199A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963115.12e-19protein tesmin/TSO1-like CXC 7
SwissprotQ9LUI32e-14TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A3L6T4654e-20A0A3L6T465_PANMI; Protein tesmin/TSO1-like CXC 7
STRINGOBART12G18260.14e-20(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-17Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  2. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  3. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]