PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17891A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 18479 Da PI: 10.4574 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.2e-08 | 76 | 103 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 r+h+e+ErrRR+riN +++Lr ++P Oropetium_20150105_17891A 76 RNHSEAERRRRERINAHLATLRGMVPCT 103 58************************83 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.07E-8 | 67 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 8.55 | 73 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-8 | 76 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-7 | 76 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSFCFADRLR RGSLNGDTMR SVPLSVDDSG LYAGFGGGHQ LAGASTMSVL LEDGNAEELD 60 DATKKKGGDK AATALRNHSE AERRRRERIN AHLATLRGMV PCTDKVCTLR FKFPVKVAAG 120 VVAPALARRR RRAGDVSSHA GDEAQRPATR AAVRAQAEQH RPPCPGCCVR PN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 85 | KKKGGDKAATALRNHSEAERRRR |
2 | 81 | 86 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17891A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915628.1 | 2e-13 | transcription factor bHLH30 | ||||
STRING | Pavir.Ea00157.1.p | 4e-14 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20999 | 6 | 7 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17891A |