 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_17725A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 347aa MW: 39299.3 Da PI: 7.0009 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_17725A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.2 | 1.3e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81
+ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g
Oropetium_20150105_17725A 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAG 92
69****************************.9***************943444442456************************* PP
NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+Wkatg+dk+++ ++ + +gl+ktLvfy grap+g+ktdW+mheyrl
Oropetium_20150105_17725A 93 FWKATGRDKAIFLSNASRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139
*********************************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0003002 | Biological Process | regionalization |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0010455 | Biological Process | positive regulation of cell fate commitment |
| GO:0048829 | Biological Process | root cap development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MHPSSGTLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLSNASR IGLRKTLVFY 120
IGRAPHGKKT DWIMHEYRLD EENVEIQEDG WVVCRVFKKK NYQRGFNPAE MATMEDDELP 180
PLPVPVHGAM PTTEHKHNPH LIHYNFPSFD PSMQLPQLTN ADQPVPALLS GHQPXXXXXX 240
XXXXVECSQN LMKLTTNGSQ GMLPEGAGVE RFAGTTDWSI LDKLLASHQN LDQLFQGKQL 300
VTAALEAPMV PYHQQLMELG GTSSTLQKLP LQCLGGEAAD LLRFPK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-52 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 8e-52 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 8e-52 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ833965 | 1e-155 | AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene). |
