PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17513A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HB-other
Protein Properties Length: 332aa    MW: 36805.3 Da    PI: 4.6863
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17513AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-09259309353
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                 R ++++ q+e+Le+++ +++ p+ +++  + + ++L+ + +  WF  rR 
  Oropetium_20150105_17513A 259 ARKRLKRVQVETLERVYLRSKRPTNTMISSIVQVTNLPRKTIVKWFEDRRE 309
                                588999*******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.268254314IPR001356Homeobox domain
SMARTSM003892.6E-4256318IPR001356Homeobox domain
SuperFamilySSF466891.24E-9257311IPR009057Homeodomain-like
CDDcd000866.05E-8257308No hitNo description
Gene3DG3DSA:1.10.10.601.1E-8258309IPR009057Homeodomain-like
PfamPF000466.1E-7259309IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MATVLPLAMP TALSAPRTSI SSTPSPAPLL GTHAHLTLRL RGSPRSVACA LRRRPTKYKT  60
KIQNDDVAAE DGMDDEDEDG ALEALFKQLE EDLENDDLSV DNDDDEISEE DMARFEQELA  120
EAIGDVGGGG ESAGELFSDF EESGIDEKVD RNEQQELKSW QLRRLARALK IGRRKTSIKN  180
LAGELGLDRA LVIELLRNPP PKLLLMSDSL PDETPLKPEV KEVEPSSSTI GDEAEASHAT  240
DINPETELPI HVRSAEWSAR KRLKRVQVET LERVYLRSKR PTNTMISSIV QVTNLPRKTI  300
VKWFEDRREQ DGVPDHRAIF KRSLSGTVAS P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258266ARKRLKRVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17513A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659724.11e-152protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0A9IZX91e-159A0A0A9IZX9_ARUDO; Uncharacterized protein
STRINGGRMZM2G163641_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107003542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-57overexpressor of cationic peroxidase 3