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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_17494A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 456aa MW: 49881.8 Da PI: 6.3231 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_17494A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56 | 8.8e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+d+v+ +G g+W+ + g++R++k+c++rw ++l
Oropetium_20150105_17494A 24 KGPWTPEEDKRLADYVQAHGEGSWNQVRINAGLNRCGKSCRLRWSNHL 71
79*******************************************996 PP
|
| 2 | Myb_DNA-binding | 35.3 | 2.6e-11 | 82 | 120 | 6 | 46 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+eE e++++ + +G++ W++ a+ ++ gRt++++k++w++
Oropetium_20150105_17494A 82 AEEIEKIYRMHMAWGNK-WAKMAAQLP-GRTDNEIKNFWNT 120
8****************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 456 aa
Download sequence Send
to blast |
MTAPTPTARD GAARRRGGQS QLKKGPWTPE EDKRLADYVQ AHGEGSWNQV RINAGLNRCG 60
KSCRLRWSNH LRPDLKKVPL DAEEIEKIYR MHMAWGNKWA KMAAQLPGRT DNEIKNFWNT 120
RLKRIQKSGL PIYPDHLHLQ PSNQDMNFGT PEEPRGTKRP NEFLRDVLGI SDLMHEYFNP 180
TAFTKVFSDM SNPPHPSDVH PNSLLMDAKP LKLLKSSGCI AAVYSGSHSL VQIPDESEEA 240
VCVTSFNYGM TDNQLAPFSN GVVSDYPIFD GNPSTSWTAQ RPMKTELPSV QNSNYGLGDA 300
CVYDCPSGSF ELADSLLESP GSPKSESISS HYSLDAILYK GDGIVDPTMS QVVFEPPFSC 360
NQVPQSNAHS LWHFTSVPGD DEIEDYPHSE IQASKPPSSS DAILAENKCN PDTSFTGRGL 420
ARAVAEPGWV RAGRGVGEAA APRVAVAGLG VGGFQ*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1h8a_C | 1e-27 | 21 | 124 | 24 | 126 | MYB TRANSFORMING PROTEIN |
