PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17436A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 299aa    MW: 31219.8 Da    PI: 9.6975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17436AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-0799124227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                kt+ C+ +     Ck G++C+FaHg+
  Oropetium_20150105_17436A  99 KTRMCNKYNTAEGCKWGSKCHFAHGE 124
                                9***********************96 PP
2zf-CCCH35.31.9e-11264289127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +kt+lC +f + G C +G+rC+FaHg+
  Oropetium_20150105_17436A 264 FKTKLCENFNK-GSCTFGERCHFAHGE 289
                                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83758IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.3854659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-1494129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-896128IPR000571Zinc finger, CCCH-type
SMARTSM003561.697124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.01997125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.47E-14166238IPR004088K Homology domain, type 1
SMARTSM003221.4E-9168238IPR004087K Homology domain
PROSITE profilePS5008414.865169233IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.8E-15169237IPR004088K Homology domain, type 1
CDDcd001053.55E-13171233No hitNo description
PfamPF000131.6E-10171234IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-16261295IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7263289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8263294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718263290IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9264289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDPGRKRTAP EGANGSGGAK RPRGFLYVHI HSDAYMMFPL CSTAGCPFGA SCHFLHNFPG  60
GYQAVAKMTN LGGPPVPSPM GRMPMGPGVP DGPPTPSMKT RMCNKYNTAE GCKWGSKCHF  120
AHGERELGKP MQLDNSMGGP PMGPGPNGHF MPPPMPVPDM VPPSTFGASA TAKISVDASL  180
AGGIIGKGGT NTKHISRVTG AKLAIRDNEA DSNLKNIELE GTFDQIKHAS AMVTELIVRI  240
GGKAPQQAKN LGRGSHAGGP GSNFKTKLCE NFNKGSCTFG ERCHFAHGEA ELRKPAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_17436A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-163zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-154C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1111e-168A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.J02805.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-41C3H family protein