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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_17436A |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
C3H |
| Protein Properties |
Length: 299aa MW: 31219.8 Da PI: 9.6975 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_17436A | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.1 | 5.4e-07 | 99 | 124 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
Oropetium_20150105_17436A 99 KTRMCNKYNTAEGCKWGSKCHFAHGE 124
9***********************96 PP
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| 2 | zf-CCCH | 35.3 | 1.9e-11 | 264 | 289 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +G+rC+FaHg+
Oropetium_20150105_17436A 264 FKTKLCENFNK-GSCTFGERCHFAHGE 289
69*********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 4.8 | 37 | 58 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 7.385 | 46 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-14 | 94 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-8 | 96 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.019 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 8.47E-14 | 166 | 238 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.4E-9 | 168 | 238 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.865 | 169 | 233 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 5.8E-15 | 169 | 237 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.55E-13 | 171 | 233 | No hit | No description |
| Pfam | PF00013 | 1.6E-10 | 171 | 234 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-16 | 261 | 295 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.4E-7 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.83E-8 | 263 | 294 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.718 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.0E-9 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MDPGRKRTAP EGANGSGGAK RPRGFLYVHI HSDAYMMFPL CSTAGCPFGA SCHFLHNFPG 60
GYQAVAKMTN LGGPPVPSPM GRMPMGPGVP DGPPTPSMKT RMCNKYNTAE GCKWGSKCHF 120
AHGERELGKP MQLDNSMGGP PMGPGPNGHF MPPPMPVPDM VPPSTFGASA TAKISVDASL 180
AGGIIGKGGT NTKHISRVTG AKLAIRDNEA DSNLKNIELE GTFDQIKHAS AMVTELIVRI 240
GGKAPQQAKN LGRGSHAGGP GSNFKTKLCE NFNKGSCTFG ERCHFAHGEA ELRKPAAA*
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