PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_17309A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 376aa MW: 37715.2 Da PI: 6.1631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.5e-12 | 154 | 199 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Oropetium_20150105_17309A 154 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 199 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.46E-13 | 147 | 203 | No hit | No description |
SuperFamily | SSF47459 | 6.67E-17 | 147 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.282 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-16 | 151 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 154 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-13 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MASGDGGGGP QADDFFDQML STLPSAWADL GAGSKSPWEL SAGAAAEDQG PFGDESALLT 60 SRLEQHQIGG DKSSPGGGDH AVFNGFEMHS ATAVQQPFGQ QGGSVSPQSL GGPAASSGGT 120 PGGGTTSSAG GGGGAAPPRQ QRVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN 180 KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAGMAPLV ASMSSEGNNN SNGSSSNGGG 240 GAKGSSAPAX XXXXXXXXXX XNNGGGLRVT EHQVAKMMEE DMGTAMQYLQ GKGLCLMPIS 300 LASXXXXXXX XXXLLSRPPP PVARHAAASA QQLHDGNGAA AATAATSSPA AANGGGAGGG 360 DDARPGVSDG GGKLC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_17309A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 1e-52 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560994.1 | 1e-120 | transcription factor bHLH82 | ||||
Swissprot | Q9ZUG9 | 6e-69 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A287VWG4 | 1e-121 | A0A287VWG4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A3B6REI0 | 1e-120 | A0A3B6REI0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446X4U6 | 1e-120 | A0A446X4U6_TRITD; Uncharacterized protein | ||||
STRING | BRADI1G47350.1 | 1e-120 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 5e-43 | LJRHL1-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_17309A |
Publications ? help Back to Top | |||
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